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  • Which CPT Codes are Used in Laboratory Billing?

Which CPT Codes are Used in Laboratory Billing?

May 28, 2025 / admin / Articles, Hematology, Immunology, Immunology Billing, Lab CPT Codes, Laboratory CPT Codes, Microbiology and Infectious Disease, Molecular Diagnostics and Genetics, Pathology, Pathology Billing, Toxicology, Toxicology Billing, Urinalysis
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Laboratory Billing

Medical Doctor Needing CredentialingLaboratory testing represents a significant portion of healthcare diagnostics and plays a crucial role in disease detection, management, and prevention. For healthcare providers and billing specialists, understanding the Common Procedural Terminology (CPT) codes used in laboratory billing is essential for proper reimbursement and compliance.

Below, an overview of the most commonly used CPT codes across various laboratory specialties, helping healthcare professionals navigate the complex landscape of laboratory billing.

Understanding Laboratory CPT Codes

CPT codes for laboratory services are primarily found in the Pathology and Laboratory section (80000-89999) of the CPT codebook. These codes represent procedures ranging from basic blood tests to complex genetic analyses.

Laboratory CPT codes are generally categorized by:

  • Testing methodology
  • Specimen type
  • Purpose of analysis
  • Complexity level

Most Common Laboratory CPT Codes by Specialty

Chemistry

Chemistry tests are among the most frequently ordered laboratory tests and include basic metabolic panels, lipid testing, and specific analyte measurements.

CPT CodeDescription
80053Comprehensive Metabolic Panel
80061Lipid Panel
80048Basic Metabolic Panel
82607Vitamin B-12
82652Vitamin D, 1,25-dihydroxy
82306Vitamin D, 25-hydroxy
82570Creatinine, other source (urine)
82947Glucose, quantitative
83036Hemoglobin A1C
84153Prostate-specific antigen (PSA), total
84439Thyroxine, free (FT4)
84443Thyroid Stimulating Hormone (TSH)

Hematology

Hematology testing examines blood components and is crucial for diagnosing various blood disorders and monitoring overall health.

CPT CodeDescription
85025Complete Blood Count (CBC) with automated differential
85027Complete Blood Count (CBC) without differential
85610Prothrombin time (PT)
85730Partial Thromboplastin Time (PTT)
85378D-dimer test
85046Blood smear morphology
85014Hematocrit
85018Hemoglobin

Microbiology and Infectious Disease

These tests identify pathogens and assess antimicrobial sensitivity to guide treatment for infections.

CPT CodeDescription
87086Urine culture, bacterial
87070Culture, bacterial, any source
87088Urine culture and colony count
87110Culture, chlamydia
87206Smear, fluorescent and/or acid-fast stain
87430Streptococcus, group A
87491Chlamydia trachomatis, amplified probe
87591Neisseria gonorrhoeae, amplified probe
87798Infectious agent detection by nucleic acid, not otherwise specified
87806HIV-1 antigen(s) with HIV-1 and HIV-2 antibodies
87880Streptococcus, group A, direct optical observation

Immunology

Immunology tests assess immune system function and are used to diagnose autoimmune conditions, allergies, and immunodeficiencies.

CPT CodeDescription
86003Allergen specific IgE, quantitative or semiquantitative
86039Antinuclear antibodies (ANA)
86140C-reactive protein
86592Syphilis test, non-treponemal antibody
86677Helicobacter pylori antibody
86703HIV-1 and HIV-2, single assay
86756Respiratory syncytial virus antibody
86769SARS-CoV-2 (COVID-19) antibody

Molecular Diagnostics and Genetics

These advanced tests examine genetic material to diagnose genetic disorders, identify cancer mutations, and detect infectious agents.

CPT CodeDescription
81228Cytogenomic constitutional microarray analysis
81240F2 (prothrombin, coagulation factor II) gene analysis
81420Fetal chromosomal aneuploidy genomic sequence analysis
81479Unlisted molecular pathology procedure
87635SARS-CoV-2 (COVID-19), amplified probe technique
87798Infectious agent detection by nucleic acid, not otherwise specified
87901HIV-1 genotype analysis, reverse transcriptase and protease regions

Urinalysis

Urinalysis tests evaluate urine specimens to diagnose urinary tract infections, kidney disease, and other metabolic conditions.

CPT CodeDescription
81001Urinalysis, automated with microscopy
81002Urinalysis, non-automated without microscopy
81003Urinalysis, automated without microscopy
81025Urine pregnancy test, visual color comparison
82043Albumin, urine, microalbumin, quantitative
82570Creatinine, other source (urine)

Toxicology

Toxicology tests detect the presence of drugs, medications, and other substances in specimens.

CPT CodeDescription
80305Drug test(s), presumptive, qualitative
80306Drug test(s), presumptive, read by instrument
80307Drug test(s), presumptive, complex chromatography
80320-80377Drug assays (specific drugs)
82075Alcohol (ethanol), breath
83992Phencyclidine (PCP)

Pathology

Pathology services include tissue examination to diagnose diseases and determine treatment options.

CPT CodeDescription
88305Surgical pathology, Level IV examination
88307Surgical pathology, Level V examination
88312Special stain, Group I
88342Immunohistochemistry, each antibody
88360Morphometric analysis, tumor immunohistochemistry
88312Special stain, Group I

Modifier Codes for Laboratory Services

Modifiers help specify when laboratory services differ from standard procedures:

ModifierDescription
90Reference (outside) laboratory
91Repeat clinical diagnostic laboratory test
92Alternative laboratory platform testing
QWCLIA waived test
59Distinct procedural service

Best Practices for Laboratory Billing

  1. Proper Documentation: Ensure all laboratory tests have appropriate documentation showing medical necessity.
  2. Test Bundling Awareness: Be aware of which tests are bundled together under a single panel code versus those that can be billed separately.
  3. Frequency Limitations: Monitor frequency limitations for certain tests, as Medicare and other payers may have specific limitations.
  4. Advance Beneficiary Notice (ABN): Utilize ABNs when applicable for tests that may not be covered due to frequency or medical necessity issues.
  5. Modifier Usage: Apply appropriate modifiers when tests are repeated on the same day or when a reference laboratory is used.
  6. CLIA Certification: Ensure your laboratory has appropriate CLIA certification for all tests being performed.
  7. Diagnosis Code Matching: Link appropriate ICD-10 codes to each laboratory test to demonstrate medical necessity.

Common Laboratory Billing Challenges

Medical Necessity Requirements

Payers require that laboratory tests be medically necessary for the diagnosis or treatment of a specific condition. Documentation must support the order for the test.

Frequency Limitations

Many laboratory tests have frequency limitations. For example, Medicare typically covers HbA1C testing only every three months for controlled diabetics.

Duplicate Billing

Care must be taken to avoid billing for the same test multiple times on the same date of service unless medically necessary and properly documented.

Panel vs. Individual Test Billing

When components of a panel are performed, the panel code should be used rather than billing for individual tests separately.

Summary: Commonly Used CPT Codes in Laboratory Billing

Understanding laboratory CPT codes is essential for accurate billing and optimal reimbursement. Staying current with code updates, payer policies, and documentation requirements will help ensure compliance and reduce the risk of claim denials.

Laboratory billing specialists should regularly review CPT code updates, payer-specific guidelines, and clinical documentation to optimize the billing process and maintain compliance with regulatory requirements.


Disclaimer: CPT codes and billing guidelines change frequently. This article is for informational purposes only and should not be considered as billing advice. Always verify current codes and payer requirements before submitting claims.

Hematology, Immunology, Immunology Billing, Lab CPT Codes, Laboratory CPT Codes, Microbiology and Infectious Disease, Molecular Diagnostics and Genetics, Pathology, Pathology Billing, toxicology, toxicology billing, Urinalysis 0

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  • Oncology
  • Pathology
  • OBGYN
  • Biologics and Specialty Drugs
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Practices Served

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  • Oncology
  • Pathology
  • OBGYN
  • Biologics and Specialty Drugs
  • Telestroke and Teleneurology
  • Remote Patient Monitoring
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  • Home Infusion Therapy
  • Speech Therapy
  • Substance Abuse
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  • Physical Therapy (PT)
  • Occupational Therapy

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